{"id":40,"date":"2015-10-21T11:14:15","date_gmt":"2015-10-21T10:14:15","guid":{"rendered":"http:\/\/blog.u-bourgogne.fr\/list-maps\/?page_id=40"},"modified":"2017-03-21T15:31:55","modified_gmt":"2017-03-21T14:31:55","slug":"inra","status":"publish","type":"page","link":"https:\/\/blog.ube.fr\/list-maps\/consortium\/beneficiaries\/inra\/","title":{"rendered":"French National Institute for Agricultural Research"},"content":{"rendered":"<p class=\"titre2\" style=\"text-align: center;font-family: streetvertising;color: #483d8b;font-size: 18px\"><a href=\"http:\/\/www.inra.fr\/en\/Scientists-Students\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-581\" src=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/311123_Logo_INRA.jpg\" alt=\"Logotype-INRA-cmjn\" width=\"369\" height=\"152\" srcset=\"https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/311123_Logo_INRA.jpg 1411w, https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/311123_Logo_INRA-300x124.jpg 300w\" sizes=\"auto, (max-width: 369px) 100vw, 369px\" \/><\/a><\/p>\n<p>&nbsp;<\/p>\n<p class=\"titre2\" style=\"text-align: center;font-family: streetvertising;color: #483d8b;font-size: 18px\"><strong style=\"color: #483d8b\">PRESENTATION OF THE INSTITUTE<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;text-align: justify;color: #000000\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 INRA was set up in 1946 in response to pressing demands from society to \u201cfeed France.\u201d Today challenges such as climate change, the nutritional status of populations, the ecological equilibrium of rural areas and the competitiveness and sustainability of production are global in nature, and agriculture plays a key role in overcoming them. INRA\u2019s research is at the heart of these issues. The French National Institute for Agricultural Research (INRA) produces scientific knowledge and works for economic and social innovation in the areas of food, agriculture and the environment. There are 18 Research Centers (mainly in France and overseas departments), more than 200 Research Units and 50 experimental &amp; technical platforms. With 74% of staff based in the provinces on more than 150 sites, the Institute is present in almost all French regions, including those overseas.The missions:<\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Produce scientific knowledge<\/p>\n<\/li>\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Develop innovations and know-how<\/p>\n<\/li>\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Inform public decision-making<\/p>\n<\/li>\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Develop scientific culture and participate in the science\/society debate<\/p>\n<\/li>\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Contribute to training in and through research<\/p>\n<\/li>\n<li style=\"color: #000000;line-height: 70%\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Promoting ethics and a code of conduct<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Website:<\/strong> <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/www.inra.fr\/en\/Scientists-Students\">http:\/\/www.inra.fr\/en\/Scientists-Students<\/a><\/p>\n<p class=\"titre2\" style=\"text-align: center;color: #483d8b;font-family: streetvertising;font-size: 18px\"><strong style=\"color: #483d8b\">UR454 INRA SAINT-GENES-CHAMPANELLE<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;text-align: justify;color: #000000\">The Research Unit UR454 belongs to the Microbiology and Food Chain Department (MICA) and is localized in Saint-Gen\u00e8s-Champanelle, France. The Research Unity\u2019s project aims to characterize the adaptation of bacteria, including enterhemorrhagic Escherichia coli (EHEC), to digestive and food environments and the interactions of intestinal microbiota with humans. UR454 goals are related to human health through food safety, prevention of infectious diseases at EHEC and functional pathologies. The area of expertise is the digestive and food microbial ecosystems and their interrelations with the host, animal or human (impact on nutrition and health) or environment (quality of food).<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Website :<\/strong> <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"https:\/\/www6.ara.inra.fr\/microbiologie\">https:\/\/www6.ara.inra.fr\/microbiologie<\/a><\/p>\n<p class=\"titre2\" style=\"text-align: center;color: #483d8b;font-family: streetvertising;font-size: 18px\"><strong style=\"color: #483d8b\">ROLE IN THE PROJECT<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;text-align: justify;color: #483d8b\"><a style=\"text-decoration: none;color: #483d8b\" href=\"http:\/\/blog.ube.fr\/list-maps\/early-stage-researchers\/tiago-santos\/\">Sub-project 5: Role of protein secretion in adaptation of <em style=\"color: #483d8b\">L. monocytogenes<\/em> <\/a><\/p>\n<p style=\"color: #483d8b;font-family: streetvertising;text-align: center;font-size: 18px\"><strong style=\"color: #483d8b\">STAFF INVOLVED<\/strong><\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><strong style=\"color: #483d8b\">Michel H\u00c9BRAUD<br \/>\n<\/strong><\/p>\n<p style=\"text-align: left;padding-left: 60px\"><a href=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/Michel-H\u00e9braud.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-thumbnail wp-image-582\" src=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/Michel-H\u00e9braud-150x150.jpg\" alt=\"Michel H\u00e9braud\" width=\"150\" height=\"150\" \/><\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Education<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">2014: Habilitation provided for 5 years by the Scientific Council of the University of Auvergne for teaching in the area of &#8220;Life sciences&#8221;.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">2006: Habilitation \u00e0 Diriger des Recherches (HDR), Universit\u00e9 Blaise Pascal &#8211; Clermont-Ferrand.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">1988: Ph.D. Production and characterization of hydrolases secreted by the rumen anaerobic fungi, Universit\u00e9 Claude Bernard &#8211; Lyon I.<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Professional and teaching experience<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\"><span style=\"padding-right: 60px;color: #000000\">Since November 2006:<\/span><br \/>\nResearch Director ([DR2] &#8220;Directeur de Recherche, 2\u00e8me classe&#8221;) Institut National de la Recherche Agronomique (INRA), Centre de Recherche Clermont-Ferrand\/Theix, UR454 Microbiologie, F-63122 Saint-Gen\u00e8s Champanelle, France.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">January 1996 &#8211; October 2006:<br \/>\nFirst class Senior Scientist [CR1] Institut National de la Recherche Agronomique (INRA), Centre de Recherche Clermont-Ferrand\/Theix, UR370 Meat Research Station, F-63122 Saint-Gen\u00e8s Champanelle, France.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Since 1996:<br \/>\nLecturer on short-term contracts for a total of 60 to 70 h\/year for 2nd-year Bsc students and 2nd-year MSc students at the University Blaise Pascal and University of Auvergne, Clermont-Ferrand; University of Bourgogne, Dijon, France. Courses and practical works in Biofilm formation, Quorum sensing, Psychrotrophic bacteria and adaptation to low temperatures, Proteomic analyses; tutored projects.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">September 1989 &#8211; December 1995:<br \/>\nSecond class Junior Scientist [CR2] Institut National de la Recherche Agronomique (INRA), Centre de Recherche Clermont-Ferrand\/Theix, UR370 Meat Research Station, F-63122 Saint-Gen\u00e8s Champanelle, France<\/p>\n<\/li>\n<\/ul>\n<p style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Research Interests<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px\">Molecular microbiology, particularly in relation with food safety; Adhesion and biofilm formation of bacteria on abiotic surfaces; Stress resistance\/adaptation and persistence in food plant environment; Cleaning-disinfection treatments; Proteomic approaches.<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-left: 60px;padding-right: 60px\"><strong style=\"color: #000000\"> Mains publications:<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Renier, S.*, Chafsey, I.*, Chambon, C., Caccia, N., Charbit, A., H\u00e9braud, M.* and Desvaux, M.* 2015. Contribution of the multiple Type I signal peptidases to the secretome of<em style=\"color: #000000\"> Listeria monocytogenes<\/em>: Deciphering their specificity for secreted proteins by exoproteomic analysis. J. Proteomics, 117: 95-105. *Share the first and last authorships respectively.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Renier, S., Chagnot, C., Deschamps, J., Caccia, N., Szlavik, J., Joyce, S., Popowska, M., Hill, C., Kn\u00f8chel, S., Briandet, R., H\u00e9braud, M. and Desvaux, M.. 2014. Inactivation of the SecA2 protein export pathway in <em style=\"color: #000000\">Listeria monocytogenes<\/em> promotes cell aggregation, impacts biofilm architecture and induces biofilm formation in environmental condition. Environ. Microbiol., 16: 1176-1192.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Renier, S., Chambon, C., Viala, D. Chagnot, C., H\u00e9braud, M. and Desvaux, M. 2013. Exoproteomic analysis of the SecA2-dependent secretion in <em style=\"color: #000000\">Listeria monocytogenes<\/em> EGDe. J. Proteomics 80: 183-195.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Renier, S., Micheau, P., Talon, R. H\u00e9braud, M. and Desvaux, M. 2012. Subcellular localization of extracytoplasmic proteins in monoderm bacteria: rational secretomics-based strategy for genomic and proteomic analyses. PLoS One, 7: e42982.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Renier, S., H\u00e9braud, M. and Desvaux, M. 2011. Molecular biology of surface colonization by <em style=\"color: #000000\">Listeria monocytogenes:<\/em> an additional facet of a Gram-positive foodborne pathogen. Environ. Microbiol. 13: 835-850.<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Full list of publications:<\/strong> <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/www.researcherid.com\/rid\/D-1009-2009\">http:\/\/www.researcherid.com\/rid\/D-1009-2009<\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Contact:<\/strong> <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"mailto:michel.hebraud@inra.fr\">michel.hebraud@inra.fr<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p class=\"titre2\" style=\"text-align: center;color: #483d8b;font-family: streetvertising;font-size: 18px\"><strong style=\"color: #483d8b\">UR1077 MaIAGE JOUY-EN-JOSAS<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;text-align: justify;color: #000000\">Applied Mathematics and Computer Science, form Genomes to the Environment (MaIAGE) is a research laboratory in Jouy-en-Josas, France. The MaIAGE laboratory gathers mathematicians, computer scientists, bioinformaticians and biologist to tackle problems coming from biology, agronomy and ecology. MaIAGE develops original methods in mathematics, statistics and computer science which are generic or driven by specific biological problems. A particular attention is paid to develop and make available softwares, databases, ontologies and web services so that biologists can use them easily to analyze their data or to mine the scientific literature.<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Website :<\/strong> <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/maiage.jouy.inra.fr\/?q=en\/home\">http:\/\/maiage.jouy.inra.fr\/?q=en\/home<\/a><\/p>\n<p class=\"titre2\" style=\"text-align: center;color: #483d8b;font-family: streetvertising;font-size: 18px\"><strong style=\"color: #483d8b\">ROLE IN THE PROJECT<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;text-align: justify;color: #483d8b\"><a style=\"text-decoration: none;color: #483d8b\" href=\"http:\/\/blog.ube.fr\/list-maps\/early-stage-researchers\/islam-ibrahim-sultan\/\">Sub-project 9: Transcription regulatory network construction<\/a><\/p>\n<p style=\"color: #483d8b;font-family: streetvertising;text-align: center;font-size: 18px\"><strong style=\"color: #483d8b\">STAFF INVOLVED<\/strong><\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><strong style=\"color: #483d8b\">Vincent FROMION<br \/>\n<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Education<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px\">Postdoc position (INRIA) at University Southern California, Los Angeles, USA and at University &#8220;Sapienza&#8221;, Roma, Italy (1996-97)<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px\">PhD in Automatic control (1995) and HdR (2006), Universit\u00e9 Paris-Sud<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Professional and teaching experience<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\">Since 2006:<br \/>\nSenior Research Scientist at INRA \u2013 Jouy-en-Josas<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\">1999-2006:<br \/>\nResearch Scientist at INRA \u2013 Montpellier<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\"><span style=\"padding-right: 60px;color: #000000\">1997-1999:<\/span><br \/>\nEngineer at Matra-Transport International Company (France)<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\"><span style=\"padding-right: 60px;color: #000000\">1995-1996:<\/span><br \/>\nEngineer at ONERA<\/p>\n<\/li>\n<\/ul>\n<p style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Research Interests<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px;text-align: justify\">The main scientific interests of V. Fromion are in the fundamental research on Systems and control Theory: linear and nonlinear control. He has a great interest to the so-called robust control approach and he made contributions in the extension of the H-infinity control approach to the nonlinear context. He also had an interest in a related question about the theoretical foundation of the gain scheduling approach and about subjects on the LPV analysis and control in collaboration with Pr. G\u00e9rard Scorletti. He has also strong interest for various kinds of applications. His first interest was about the control of highly-maneuverable missiles. More recently, He investigated modeling and control problem attached to open channel hydraulic systems in collaboration with Dr. X. Litrico. Since 2005, he joined the MaIAGE laboratory in order to head a project on Systems Biology about the understanding of regulatory networks of biological system. He has been involved in the EU BaSysBio project (2006-2010) and BaSynthec project (2010-2013) where He led the System Biology\/Synthetic workpackage. He also coordinates the French project &#8220;Institute for Modelling Living Systems&#8221; (IMSV, 2013-2016) involving 11 research institutions and 6 Labex of the University of Paris-Saclay, France.<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-left: 60px;padding-right: 60px\"><strong style=\"color: #000000\">Main recent publications:<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Goelzer, A, Muntel, J, Chubukov, V, Jules, M, Prestel, E, N\u00f6lker, R, &#8230; &amp; Fromion, V (2015). Quantitative prediction of genome-wide resource allocation in bacteria. Metabolic engineering, 32, 232-243.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Muntel, J, Fromion, V, Goelzer, A, Maa\u03b2, S, M\u00e4der, U, B\u00fcttner, K, &#8230; &amp; Becher, D (2014) Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography\/mass spectrometry (LC\/MSE). Molecular &amp; Cellular Proteomics, 13(4), 1008-1019.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Maa\u03b2, S, Wachlin, G, Bernhardt, J, Eymann, C, Fromion, V, Riedel, K, Becher, D, &amp; Hecker, M (2014) Highly precise quantification of protein molecules per cell during stress and starvation responses in Bacillus subtilis. Molecular &amp; Cellular Proteomics, 13(9), 2260-2276.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Goelzer, A, &amp; Fromion, V (2014) Towards the modular decomposition of the metabolic network. In A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations (pp. 121-152). Springer Netherlands.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">He, F, Fromion, V, &amp; Westerhoff, H V (2013) (Im) Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis. BMC systems biology, 7(1), 131.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Fromion, V Leoncini, E &amp; Robert, P (2013) Stochastic gene expression in cells: A point process approach. SIAM Journal on Applied Mathematics, 73(1), 195-211.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">Nicolas P, M\u00e4der U, Dervyn D*&#8230; , Fromion V, Goelzer A\u2026, Jules M\u2026, &amp; Noirot P (2012) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science, 335:1103-6.<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Contact: <\/strong><a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"mailto:Vincent.fromion@inra.Fr\">Vincent.fromion@inra.fr<\/a><\/p>\n<p>&nbsp;<\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><strong style=\"color: #483d8b\">Sophie SCHBATH<br \/>\n<\/strong><\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><a href=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/schbath-3.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-661\" src=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/schbath-3.jpg\" alt=\"schbath-3\" width=\"127\" height=\"169\" srcset=\"https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/schbath-3.jpg 684w, https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/schbath-3-300x400.jpg 300w\" sizes=\"auto, (max-width: 127px) 100vw, 127px\" \/><\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Education<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">1992 Master degree in Probability and Statistics (University Paris XI)<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">1995 PhD thesis in Statistics (University Paris V) : \u201cAsymptotic distributions of word count in Markov chain models ; application to the identification of unexpected motifs in DNA sequences\u201d<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Professional and teaching experience<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\"><span style=\"padding-right: 60px;color: #000000\">1996-2005:<\/span><br \/>\nYoung Researcher in Statistics at the French National Institute for Agricultural Research (INRA); Biometrics Lab (1996-1999) then Mathematics, Informatics and Genome (MIG) Lab (2000-2005), Jouy-en-Josas, France.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\"><span style=\"color: #000000\">From 2006 :<\/span><br \/>\nDirector of Research in Statistics\/Bioinformatics at INRA; MIG Lab (2006-2014) then MaIAGE Lab (from 2015)<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\"><span style=\"color: #000000\">2012-2014 and 2015-2019:<\/span><br \/>\nHead of the MIG Lab; Head of the MaIAGE Lab.<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\"><span style=\"color: #000000\">2010-2016:<\/span><br \/>\nPresident of the French BioInformatics Society, <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/www.sfbi.fr\">http:\/\/www.sfbi.fr<\/a><\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\"><span style=\"color: #000000\">2006-2013:<\/span><br \/>\nCodirector of the French GdR Molecular Bioinformatics <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"\/\/www.gdr-bim.cnrs.fr\">http:\/\/www.gdr-bim.cnrs.fr<\/a><\/p>\n<\/li>\n<\/ul>\n<p style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Research Interests<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px\">Statistical analysis of motif occurrences in biological sequences; metagenomics<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-left: 60px;padding-right: 60px\"><strong style=\"color: #000000\">Publications:<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 90px;color: #000000\">List of publications: <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"\/\/genome.jouy.inra.fr\/~schbath\/schbath-publis.html\">http:\/\/genome.jouy.inra.fr\/~schbath\/schbath-publis.html<\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 90px;color: #000000\">Complete CV: <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"\/\/genome.jouy.inra.fr\/~schbath\/papiers\/complete-cv.pdf\">http:\/\/genome.jouy.inra.fr\/~schbath\/papiers\/complete-cv.pdf<\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 90px;color: #000000\">Home page: <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"\/\/genome.jouy.inra.fr\/~schbath\/index.html\">http:\/\/genome.jouy.inra.fr\/~schbath\/index.html<\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Contact: <\/strong><a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"mailto:Sophie.Schbath@inra.fr\">Sophie.Schbath@inra.fr<\/a><\/p>\n<p>&nbsp;<\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><strong style=\"color: #483d8b\">Pierre NICOLAS<br \/>\n<\/strong><\/p>\n<p style=\"color: #483d8b;font-family: arial;text-align: left;font-size: 14px;padding-left: 60px\"><a href=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/pierre_nicolas_30pct.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-755\" src=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/pierre_nicolas_30pct.jpg\" alt=\"pierre_nicolas_30pct\" width=\"125\" height=\"169\" srcset=\"https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/pierre_nicolas_30pct.jpg 562w, https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/pierre_nicolas_30pct-300x406.jpg 300w\" sizes=\"auto, (max-width: 125px) 100vw, 125px\" \/><\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Education<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\">2003 Ph.D in Biomathematics, Joint research laboratory (CNRS, INRA, Universit\u00e9 d&#8217;Evry)<\/p>\n<\/li>\n<\/ul>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Professional and teaching experience<\/strong><\/p>\n<ul style=\"padding-left: 90px\">\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;text-align: justify\"><span style=\"padding-right: 60px;color: #000000\">Since 2005:<\/span><br \/>\nResearcher at INRA Jouy-en-Josas<\/p>\n<\/li>\n<li style=\"color: #ffffff\">\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px\"><span style=\"color: #000000\">2004-2005:<\/span><br \/>\nPostdoctoral Research Associate at University of Southern California, Computational Biology Department<\/p>\n<\/li>\n<\/ul>\n<p style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 60px\"><strong style=\"color: #000000\">Research Interests<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-right: 60px;padding-left: 90px\">My research focuses mainly on statistical bioinformatics with applications to bacterial genome analysis (genome analysis, transcriptomics, population genetics). In particular, I have a strong interest for the analysis of sophisticated statistical models involving unobserved latent variables that can serve to represent complex dependences such as arising in phylogenetically, spatially, or temporally related data.<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;padding-left: 60px;padding-right: 60px\"><strong style=\"color: #000000\">Publications:<\/strong><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 90px;color: #000000\">List of publications: <a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/genome.jouy.inra.fr\/~pnicolas\/\">http:\/\/genome.jouy.inra.fr\/~pnicolas\/ <\/a><\/p>\n<p class=\"titre2\" style=\"font-family: calibri;padding-right: 60px;padding-left: 60px;color: #000000\"><strong style=\"color: #000000\">Contact: <\/strong><a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"mailto:pierre.nicolas@inra.fr\">pierre.nicolas@inra.fr<\/a><\/p>\n<p style=\"font-family: calibri;text-align: center;font-size: 18px\"><a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/blog.ube.fr\/list-maps\/consortium\/beneficiaries\/\"><b style=\"color: #483d8b\">See the others partners beneficiaries<\/b><\/a><\/p>\n<p style=\"font-family: calibri;text-align: center;font-size: 18px\"><a style=\"text-decoration: none;font-family: calibri;color: #483d8b\" href=\"http:\/\/blog.ube.fr\/list-maps\/consortium\/partners-organizations\/\"><b style=\"color: #483d8b\">See the associated partners<br \/>\n<\/b><\/a><\/p>\n<p>&nbsp;<\/p>\n<p class=\"titre2\" style=\"font-family: calibri;color: #000000;font-size: 12px;text-align: center\"><a href=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/eulogo.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-557 \" src=\"http:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/eulogo.jpg\" alt=\"eulogo\" width=\"79\" height=\"46\" srcset=\"https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/eulogo.jpg 600w, https:\/\/blog.ube.fr\/list-maps\/wp-content\/uploads\/sites\/34\/2015\/10\/eulogo-300x175.jpg 300w\" sizes=\"auto, (max-width: 79px) 100vw, 79px\" \/><\/a>This project has received funding from the European Union\u2019s Horizon 2020 research and innovation programme under the Marie Sklodowska Curie grant agreement n\u00b0 641984<\/p>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; PRESENTATION OF THE INSTITUTE \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 INRA was set up in 1946 in response to pressing demands from society to \u201cfeed France.\u201d Today challenges such as climate change, the nutritional status of populations, the ecological equilibrium of rural areas and the competitiveness and sustainability of production are global in nature, and agriculture plays a key&hellip;<\/p>\n<p class=\"more-link-p\"><a class=\"btn btn-primary\" href=\"https:\/\/blog.ube.fr\/list-maps\/consortium\/beneficiaries\/inra\/\">Voir plus &rarr;<\/a><\/p>\n","protected":false},"author":99,"featured_media":0,"parent":13,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-40","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/pages\/40","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/users\/99"}],"replies":[{"embeddable":true,"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/comments?post=40"}],"version-history":[{"count":34,"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/pages\/40\/revisions"}],"predecessor-version":[{"id":1631,"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/pages\/40\/revisions\/1631"}],"up":[{"embeddable":true,"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/pages\/13"}],"wp:attachment":[{"href":"https:\/\/blog.ube.fr\/list-maps\/wp-json\/wp\/v2\/media?parent=40"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}